Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPIKEQEVIDLLASFEHKPVYLHVETTNGAYANHFDQRVFNAGTFLRNIQVTYTHAQLKGGNKEPYRIG----------LKLSNGGWVYVQGLTHFEVNEHDEFLIAGFNYEGQLAAALQISERPFNL
2VIZ Chain:A ((56-145))
--------------------------------------------------QLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPQVTVRA-NIAAITESDKFFIQGSNWEGILGLAYAEIARP---
General information:
TITO was launched using:
RESULT:
Template:
2VIZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1426 for 250 contacts (5.7/contact) +
2D Compatibility (PS) -6452 + (NN) 1802 + (LL) 4236
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -2888.0 ( -11.55 by residue)
QMean score : -0.159
(partial model without unconserved sides chains):
PDB file :
Tito_2VIZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VIZ-query.scw
PDB file :
Tito_Scwrl_2VIZ.pdb
: