Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEWSQIFHDITTK-----HDFKAMHDFLEKEYSTAIVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTPH--LQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANAYLESVGKSPINWCESEA
3EUG Chain:A ((7-221))
------WHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDWM----
General information:
TITO was launched using:
RESULT:
Template:
3EUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114914 for 1661 contacts (-69.2/contact) +
2D Compatibility (PS) -22693 + (NN) -11514 + (LL) 1088
1D Compatibility (HY) -20800 + (ID) 5300
Total energy: -174133.0 ( -104.84 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_3EUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EUG-query.scw
PDB file :
Tito_Scwrl_3EUG.pdb
: