Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRVITYGTYDLLHYGHIELLRRAREM--GDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVIPEKGWGQKEDDVEKFDVDVFV---MGHDWEGEFDF---LKDKCEVIYLKRTEGISTTKIKQELYGKDAK
4MVC Chain:A ((98-244))
--RVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDI----------
General information:
TITO was launched using:
RESULT:
Template:
4MVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56023 for 871 contacts (-64.3/contact) +
2D Compatibility (PS) -13325 + (NN) -5442 + (LL) 852
1D Compatibility (HY) -6000 + (ID) 1750
Total energy: -81688.0 ( -93.79 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_4MVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MVC-query.scw
PDB file :
Tito_Scwrl_4MVC.pdb
: