Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLVLLGGGYGNMRIMSRILTTSLPQDYTVTLVDRMPFHGLKPEFYALAAGTKSDKDVR---MKFPNHPQVNTVY--GEINDIDLDAQIVSVGN---------------------SKIDYDELIIGLGCEDKYHNVPGAEEYTHSIQTLSKA---RDTFHSISE----LPEG-------AKVGIVGAGLSGIELASELRES------------RSDLEIYLYDRGPRILRNFPEKLSKYVAKWFAKNNVTVVPNSNINKVEPGKIYNCDEPKDIDL---------VVWTAG--IQPV--EVVRNLPIDINSNGRVIVNQYHQVPTYRNVYVVGDCADLPHAPSAQLAEVQGDQIADVLKKQWLNEPLPDKMPELKVQGIVGSLGDKQGFAYIMDRTVTGRLASILKSGVLWLYKYHNG |
| 4GAP Chain:A ((13-375)) | --NVLILGSGWGAISFLKHIDT----KKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDK---------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186787 for 2249 contacts (-83.1/contact) +
2D Compatibility (PS) -31547 + (NN) -17376 + (LL) 3684
1D Compatibility (HY) -16800 + (ID) 4000
Total energy: -252826.0 ( -112.42 by residue)
QMean score : 0.506
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