Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
1U11 Chain:A ((24-167))
--VGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRA--------------
General information:
TITO was launched using:
RESULT:
Template:
1U11.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127702 for 1238 contacts (-103.2/contact) +
2D Compatibility (PS) -15380 + (NN) -4581 + (LL) 1676
1D Compatibility (HY) -15200 + (ID) 4250
Total energy: -165437.0 ( -133.63 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_1U11.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U11-query.scw
PDB file :
Tito_Scwrl_1U11.pdb
: