Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKGRLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRLGFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLKQLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGSLIETYQIFLNKLEDLK
2YZL Chain:A ((14-239))
---LYSGKAKSIYEIDDDKVL-IEFRDDITAG-GAKHDVKQGKGYLNALISSKLFEALEENGVKTHYIKYIEPRYMIAKKVEIIPIEVIVRNIAAGSLCRRYPFEEGKELPFPIVQFDYKNDEYGDPMLNEDIAVALGLATREELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEIGKDREGNLLVADEISPDTMRLWDKETRDVLDKDVFRKDLGDVIAKYRIVAERL----
General information:
TITO was launched using:
RESULT:
Template:
2YZL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65764 for 1784 contacts (-36.9/contact) +
2D Compatibility (PS) -23898 + (NN) -5005 + (LL) 724
1D Compatibility (HY) -23200 + (ID) 5350
Total energy: -122493.0 ( -68.66 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_2YZL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YZL-query.scw
PDB file :
Tito_Scwrl_2YZL.pdb
: