Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDINGHFSFTNYQQIFTTK-----YLKMFAYSILYAALITIITLAISYPAAYYIT----RSK--FQNILLMIMIIPTWINLLLKTYAFIGLLSHD-GVINQFFH-LFNL-PSFNLLFTTGA--FLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFYTFRKVIMPLTKEGVMTGIQVTFIPSLSLFMITRLIAGNKVINIGTAIEEQFLTI---------------QNYGMGSTIA--IFLIVFMAFILIITKSSNGRG |
3PUX Chain:F ((260-498)) | ---------------------------------------GWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILI----FKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLV---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PUX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -181541 for 1334 contacts (-136.1/contact) +
2D Compatibility (PS) -20478 + (NN) 2126 + (LL) 5596
1D Compatibility (HY) -26000 + (ID) 2800
Total energy: -223097.0 ( -167.24 by residue)
QMean score : 0.213
|
|
|