Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
2GOM Chain:A ((105-165))
--------------------------------------------------------------------------------------------------------IKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
General information:
TITO was launched using:
RESULT:
Template:
2GOM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7196 for 395 contacts (-18.2/contact) +
2D Compatibility (PS) -6666 + (NN) -3810 + (LL) 5344
1D Compatibility (HY) -8400 + (ID) 3050
Total energy: -23778.0 ( -60.20 by residue)
QMean score : 0.657
(partial model without unconserved sides chains):
PDB file :
Tito_2GOM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GOM-query.scw
PDB file :
Tito_Scwrl_2GOM.pdb
: