Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTR--VILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNEDKQILERYKIGLKKG
4MCD Chain:A ((1-238))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL---------SFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLK---------
General information:
TITO was launched using:
RESULT:
Template:
4MCD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132865 for 1638 contacts (-81.1/contact) +
2D Compatibility (PS) -24449 + (NN) -8677 + (LL) 376
1D Compatibility (HY) -23600 + (ID) 5200
Total energy: -194415.0 ( -118.69 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_4MCD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MCD-query.scw
PDB file :
Tito_Scwrl_4MCD.pdb
: