Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
1JOR Chain:A ((9-142))
---------------------------------------------KEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIY-ADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSE
General information:
TITO was launched using:
RESULT:
Template:
1JOR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -265 for 977 contacts (-0.3/contact) +
2D Compatibility (PS) -14120 + (NN) -6700 + (LL) 3524
1D Compatibility (HY) -10000 + (ID) 2550
Total energy: -30111.0 ( -30.82 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1JOR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOR-query.scw
PDB file :
Tito_Scwrl_1JOR.pdb
: