Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIISISETPNHNTMKITLSESREGMTSDTYTKVDDSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAVFE
4RKP Chain:A ((45-101))
-----VTRTPLHTSAGIAYSDSCGSIRSETRIYADEATHIYFNGTESTDDNRSVRRVLDRYS---------------------
General information:
TITO was launched using:
RESULT:
Template:
4RKP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4510 for 200 contacts (-22.6/contact) +
2D Compatibility (PS) -5832 + (NN) 368 + (LL) 2316
1D Compatibility (HY) -400 + (ID) 700
Total energy: -8758.0 ( -43.79 by residue)
QMean score : 0.134
(partial model without unconserved sides chains):
PDB file :
Tito_4RKP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RKP-query.scw
PDB file :
Tito_Scwrl_4RKP.pdb
: