Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKSVAIIGAGITGLSSAYFLKQQDPNIDVTIFEASNRPGGKIQSYR-KDGYMIELGPES-----YLGRKTIMTELAKDIGLEQDIVTNTTGQSYIFAKNKLYPIPGGSIMGIPTDIKPFVTTKLISPLGK--LRAGLDLIKKPIQMQDGDISVGAFFRARLGNEVLENLIEPLMGGIYGTDIDKLSLMSTFPNFKEKEEAFGSLI------KGMKDEKNKRLKQRQLYPGAPKGQFKQFKHGLSSFIEALEQDVKNKGVTIRYNTSVDDI-ITSQKQYKIVYSNQQEDVFDGVLVTTPHQVFLNWFGQD--PAFDYFKTMDSTTVATVVLAFDEKDIENTYDGTGFVIARTSDTDITACTWTSKKWPFT--TPEGKVLIRAYVGKPGDTVVDDHTDNELVS------IVRRDLSQMMTFKGDPEFTIVNRLPKSMPQYHVGHIQQIRQIQAHIKQTYPRLRVTGASFEAVGLPDCITQGKVAAEEVIAEL |
| 3NKS Chain:A ((2-471)) | -GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLL--LVSELGLDSEVLP--VRGDHPAAQNRFLYV-GGALHALPTGLRG---PS--PPFSKPLFWAGLRELTKP-RGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLG-----QPDSALIRQAL---AERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEA-DHVISAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHL--PVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPG---LRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQAAVSVL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NKS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162083 for 3734 contacts (-43.4/contact) +
2D Compatibility (PS) -47630 + (NN) -23951 + (LL) 2036
1D Compatibility (HY) -26800 + (ID) 5600
Total energy: -264028.0 ( -70.71 by residue)
QMean score : 0.488
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