Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKMINKLIVPVTASALLLGACGASATDSKENTLISSKAGDVTVADTMKKIGKDQIANASFTEMLNKILADKYKNKVNDKKIDEQIEKMQKQYGGKDKFEKALQQQGLTADKYKENLRTAAYHKELLSDKIKISDSEIKEDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKD-PSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEV-VKSSFGYHII-----KADKPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAYKDLLKEYDVDFKDRDIKSVVEDKILNPEKLKQGGAQGGQSGMSQ |
3RFW Chain:A ((126-273)) | -------------------------------------------------------------------------------------------------------------------------------------DKYVKPARVQAKHILVAT-----------EKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGL---KFEEFKKVINQKGQDLLNSAKVEYK-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RFW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 27474 for 839 contacts (32.7/contact) +
2D Compatibility (PS) -15061 + (NN) -2750 + (LL) 11108
1D Compatibility (HY) -9200 + (ID) 2550
Total energy: 9021.0 ( 10.75 by residue)
QMean score : 0.509
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