Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHD-IKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELF-EATDDFDYIVAMDQSNVDNIKSIN---PNLKGQLFKLLEFSNMEESDVPDPYYTN--NFEGVYDMVLSSCDNLIDYIVKDANLKEG
4Z9A Chain:A ((15-161))
---VLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLE-----------
General information:
TITO was launched using:
RESULT:
Template:
4Z9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89688 for 1173 contacts (-76.5/contact) +
2D Compatibility (PS) -14905 + (NN) -7264 + (LL) 1036
1D Compatibility (HY) -14800 + (ID) 2500
Total energy: -128121.0 ( -109.23 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_4Z9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Z9A-query.scw
PDB file :
Tito_Scwrl_4Z9A.pdb
: