Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTLVNMFFDFIIKLAKAIGIVGGVNACSSLFDEPKVPAELTNLYDK
1V54 Chain:I ((39-43))
-----------------------------FAVAEKR-----------
General information:
TITO was launched using:
RESULT:
Template:
1V54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 608 for 10 contacts (60.8/contact) +
2D Compatibility (PS) -498 + (NN) -583 + (LL) 3004
1D Compatibility (HY) 800 + (ID) 0
Total energy: 3331.0 ( 333.10 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_1V54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V54-query.scw
PDB file :
Tito_Scwrl_1V54.pdb
: