Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLL-FVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDVIDRT----LKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAA--GLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
3D4B Chain:A ((9-242))
----------LLNESRLTVTLTGAGISTPSGIPDF------------N------VFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE
General information:
TITO was launched using:
RESULT:
Template:
3D4B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112214 for 1777 contacts (-63.1/contact) +
2D Compatibility (PS) -22571 + (NN) -2929 + (LL) 1312
1D Compatibility (HY) -22000 + (ID) 4550
Total energy: -162952.0 ( -91.70 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_3D4B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D4B-query.scw
PDB file :
Tito_Scwrl_3D4B.pdb
: