Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEM--ARIAKVYAEL-GVKKIRITGGEP-LMRRDLDVLIAKLNQIDGIEDI----GLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDD---QIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEI--------DPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG |
4K38 Chain:A ((3-300)) | -----------PLSLLIKPASSGCNLKCTYCFYHSLSDNRNV---KSYGIMRDEVLESMVKRVLNEANGHCSFAFQGGEPTLAGLEFFEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGPKEI--HNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLE-------TILLGKSSSCGMNGTCTCQFV-VESDGSVYPCDFYVLDKWRL-----GNIQDMTMKELFET--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K38.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -27221 for 2126 contacts (-12.8/contact) +
2D Compatibility (PS) -29330 + (NN) -5911 + (LL) 4612
1D Compatibility (HY) -19600 + (ID) 2950
Total energy: -80400.0 ( -37.82 by residue)
QMean score : 0.173
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