Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKKVYFNHDGGVDDLVSLFLLLQ-MENVQLIGVSTIGADCYLEPSLSASVKIINRFSNED----IQVAPSYERGKNPFPKEWRMHAFFMDALPILNEP--------VKHVASNVSDKEAFEDIIQTLKRQSEKVTLLFTGPLTDLAKALQK-DSSIVQYIEKLVWMGGTFLPKGNVEEPEHDGSAEWNAYWDPEAVKIVFDS-DIEIDMVALESTNQVPLTLDVRQRWANERQYTGIDFLGVSYAAVPPLTHFITNSTYFLWDVLTTAYIGNKDLVHSIEKKVDVISYGPSQGKTFECKDGRKINVINHVDNNAFFDYITALAKKVN |
3B9G Chain:A ((14-269)) | --KNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMN---SEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSILVGTMWAM----------GGGYAWDALTAAYV--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3B9G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -128963 for 2150 contacts (-60.0/contact) +
2D Compatibility (PS) -25323 + (NN) -9616 + (LL) 4044
1D Compatibility (HY) -20000 + (ID) 4500
Total energy: -184358.0 ( -85.75 by residue)
QMean score : 0.475
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