Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLVTATTLTAGIGTALVGQAHHADAAENYTNYNNYNYNTTQTTTTTTTTTTTSSISHSGNLYTAGQCTWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTVNHTPSKGAILQSSEGPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI
4CGK Chain:B ((287-365))
---------------------------------------------------------------YPIGECTWGV-KTLAPWAGDYWGNGAQWATSAAAAGFRTGSTPQVGAIACWNDGGYGHVAVVTAVESTTRIQVSESNYAG-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4CGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32810 for 542 contacts (-60.5/contact) +
2D Compatibility (PS) -9126 + (NN) -9533 + (LL) 4252
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -53717.0 ( -99.11 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_4CGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CGK-query.scw
PDB file :
Tito_Scwrl_4CGK.pdb
: