Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYVENSYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAI-ENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNFDYSDRK
2PFB Chain:A ((17-126))
-------LDNQLCFALYSANLAMHKLYRGLLKALDLTYPQYLVMLVLWETDER-SVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR-------VIIALTETGRALRSKAGAVPEQVF-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2PFB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54070 for 652 contacts (-82.9/contact) +
2D Compatibility (PS) -10519 + (NN) -258 + (LL) 2608
1D Compatibility (HY) -12400 + (ID) 2300
Total energy: -76939.0 ( -118.00 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_2PFB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PFB-query.scw
PDB file :
Tito_Scwrl_2PFB.pdb
: