Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVI-YGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDY----ESYEKLLKDKIK
3GHA Chain:A ((25-194))
----------------------------GKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQ----VEKDSDLNQKMNIQATPTIYVNDKVIKNFADYDEIKETIEKELKGK--
General information:
TITO was launched using:
RESULT:
Template:
3GHA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10671 for 1264 contacts (-8.4/contact) +
2D Compatibility (PS) -17967 + (NN) -11392 + (LL) 3340
1D Compatibility (HY) -10000 + (ID) 3150
Total energy: -49840.0 ( -39.43 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_3GHA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GHA-query.scw
PDB file :
Tito_Scwrl_3GHA.pdb
: