Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSWGAAKQLDTASHFVLIFARKNVTSRS---PYVQHML--RDIKKYEAQ-TIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVA--FGYRQQDPPKNKTRQAYEDVIEWVGPKE
3OF4 Chain:A ((9-188))
------------QWRYATADFSG-AHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHSFGQQKVADSSA--LVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAMSAATR--------KEWAVRQAYIGLGTFLLAAAELEVDSCPMEGIEHDAYDNILSLKDL------GLSTVFACPVGYRSE----------------------
General information:
TITO was launched using:
RESULT:
Template:
3OF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73843 for 1257 contacts (-58.7/contact) +
2D Compatibility (PS) -18395 + (NN) -3728 + (LL) 3132
1D Compatibility (HY) -14400 + (ID) 3150
Total energy: -110384.0 ( -87.82 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3OF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OF4-query.scw
PDB file :
Tito_Scwrl_3OF4.pdb
: