Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRTMMNAKIHRARVTESNLNYVGSITIDSDILEAVDILPNEKVAIVNNNNGARFETYVIAGERGSGKICLNGAASRLVEVGDVVIIMTYAQLNEEEIKNHAPKVAVMNEDNVIIEMIHEKENTIVL
1PT1 Chain:A ((18-129))
MIRTMLQGKLARVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDN---------------
General information:
TITO was launched using:
RESULT:
Template:
1PT1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74546 for 830 contacts (-89.8/contact) +
2D Compatibility (PS) -12317 + (NN) -2458 + (LL) 1976
1D Compatibility (HY) -10400 + (ID) 2700
Total energy: -100445.0 ( -121.02 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_1PT1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PT1-query.scw
PDB file :
Tito_Scwrl_1PT1.pdb
: