Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRNVVLFILTAIFLAFMLLVSYCMPHYSVAVISGVEVKRMNENENTPNNKEVKTLARDVYFVQTYDPKDQKSVTVYRNEDTRFGFPFYFKFNSADISALAQSLVNQQVEVQYYGWRINLFNMFPNVIFLKPLKESDEMSKPVFSWILYALLLVGFFISARSVCTLFKGKAH
3K2T Chain:A ((28-54))
--------------------------------------------------------------SFYVYTDAET-NGTNIVYSRKDGKYGLIET-----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3K2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5422 for 109 contacts (-49.7/contact) +
2D Compatibility (PS) -3145 + (NN) -4478 + (LL) 12812
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -2133.0 ( -19.57 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3K2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K2T-query.scw
PDB file :
Tito_Scwrl_3K2T.pdb
: