Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKRMLAEFEKIQAILMAFPHEFGDWAYCIEEARESFLHIIQTIAKHAKVLVCVHTNDTIGYETLKNLP-GVEIARIDTNDTWARDFGA-------ISVENHGVLECLDFGFNGWGLKYP---SNLDNQVNFKLKHLGFLKHPLKTMPYILEGGSIESDGAGSILTNTQCLLEKNRNPHLNQNGIETMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLNKDTIVYSACEDENDEHYTALKKMQEELKTFKKLDGTPYKLIPLEIPKAVYNENQQ-----------------RLPATYVNFLLCNNALIVPTYNDP-NDTLILETLRQHTP-LEVIGVD-CNTLIKQHGSLHCVTMQLY |
| 1VKP Chain:A ((17-370)) | -----AEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCA--SPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKR----NRNIA-GIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187858 for 2772 contacts (-67.8/contact) +
2D Compatibility (PS) -34545 + (NN) -15301 + (LL) 1428
1D Compatibility (HY) -16400 + (ID) 4850
Total energy: -257526.0 ( -92.90 by residue)
QMean score : 0.521
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