Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDKGKSVKSTKKSVGMPPKTPKTDNNANSHVDNEFLILQVNDAVFPIGSYTHSFGLETYIQQKKVTNKESALEYLKANLSSQFLYTEMLSLKLTYESTLQQDLKKILGIEEVIMLSTSPMELRLANQKLGNRFIKTLQAMNELDMGAFFNAYAQTTKDPTHATSYGVFAASLNMELKKALRHYLYAQTSNMVINCVKSVPLS--QNDGQKILLSLQSPFNQLIEKTLELDESHLCAASVQNDIKAMQHESLYSRLYMS |
2VBG Chain:A ((38-132)) | ----------------------------------------------------------------------------------------------------------LGIEEIFGVP-GDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKKAAAFLTTFGVGELS-------AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTAENATYEIDRVLSQLLKERK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VBG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -27799 for 674 contacts (-41.2/contact) +
2D Compatibility (PS) -10112 + (NN) -4836 + (LL) 7332
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -40365.0 ( -59.89 by residue)
QMean score : 0.255
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