Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTLFSVYLFLSLNPLFLEAKEITWSQFLENFKNKNEDDKPKPLTIDKNNE------KQQILDKNQQILKRALEKSLKFFFIFGYNYSQAAYSTTNQNLTLTANSIGFNTATGLEHFLRNHPKVGFRIFSVYNYFHSVSLSQPQILMVQNYGGALDFSWIFVDKKTYRFRSYLGIALEQGVLLVDTIKTGSFTTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYNNHQERFKPRFNANLSLIVSF |
4U3A Chain:A ((181-228)) | -----------------IERFEKIWEQIAERFKNKSEN-----LLFEIMNEPFGNITDEQIDDMNSRILK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U3A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 8640 for 172 contacts (50.2/contact) +
2D Compatibility (PS) -4548 + (NN) -3682 + (LL) 14888
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: 11898.0 ( 69.17 by residue)
QMean score : 0.397
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