Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKE-VPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV
1J6V Chain:A ((7-153))
----VESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPMGCRTGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETIL
General information:
TITO was launched using:
RESULT:
Template:
1J6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67818 for 1096 contacts (-61.9/contact) +
2D Compatibility (PS) -15225 + (NN) -5175 + (LL) 400
1D Compatibility (HY) -10400 + (ID) 3200
Total energy: -101418.0 ( -92.53 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1J6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J6V-query.scw
PDB file :
Tito_Scwrl_1J6V.pdb
: