Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVN----KRLEAMKEEERQ-KYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDCACEGPFHDHEKKGQKGKKPSHHKH |
4KSD Chain:A ((878-931)) | ------------------------QALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KSD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 21602 for 237 contacts (91.1/contact) +
2D Compatibility (PS) -5334 + (NN) -2775 + (LL) 1888
1D Compatibility (HY) -3600 + (ID) 850
Total energy: 10931.0 ( 46.12 by residue)
QMean score : 0.342
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