Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSNTTWSPTSWHSFKIEQHPTYKDEQELERVKKELRSYPPLVFAGEARNLQERLAQVIDNKAFLLQGGDCAESFSQFSANRIRDMFKVMMQMAIVLTFAGSIPIVKVGRIAGQFAKPRSNATEILDDEEVLSYRGDIINGISKKE--REPKPERMLKAYHQSVATLNLIRAFAQGGLADLEQVHRFNLDFVKNNDFGQKYQQIADRITQALGFMRACGVEIERTPILREVEFYTSHEALLLHYEEPLVR---KDSLTNQFYDCSAHMLWIGERTRDPKGAHVEFLRGVCNPIGVKIGPNASVSEVLELCDVLNPHNLKGRLNLIVRMGSKIIKERLPKLLQGVLKEKRHILWSIDPMHGNTVKTNLGVKTRAFDSVLDEVKSFFEIHRAEGSLASGVHLEMTGENVTECIGGSQAITEEGLSCHYYTQCDPRLNATQALELAFLIADMLKKQRT |
3KGF Chain:A ((38-463)) | -----------------QQPTWPADQALA-MRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQ-AKPRSADIDALG---LRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVA-DRN--LQTAEIYASHEALVLDYERAMLRLSDG----PQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQDISETDLAGRYETACDPRLNTQQSLELAFLVAEMLRD--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3KGF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -199880 for 3683 contacts (-54.3/contact) +
2D Compatibility (PS) -45184 + (NN) -25176 + (LL) 1932
1D Compatibility (HY) -38000 + (ID) 10150
Total energy: -316458.0 ( -85.92 by residue)
QMean score : 0.555
|
|
|