Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKEKNFWPLGIMSVLIFGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYENFKSNYRFSVGLKPLTESPKTPILPYFSKGTHGDKKIQENLLNNALILEKSNTLYAQLQPLKPALDSPNIQVYLAFYPSQSQPRLLGTLDCKNACEPLKFDLLEGDKVGRYKILFKFVFKNKEELILEQLAFFK |
| 1VA6 Chain:A ((253-305)) | ------------------------------------------------------------FNDLYEYVAGLK---QAIKTPSEEYAKIGIEKDGK---RLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VA6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 477 for 270 contacts (1.8/contact) +
2D Compatibility (PS) -5228 + (NN) 320 + (LL) 4980
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -2451.0 ( -9.08 by residue)
QMean score : 0.051
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