Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA--NLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLE--ATQNAPFMATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRD-----FDAKR---QTPLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKIVQS-ESMGIDTKEDLQNALKIFSPNLLKR
3DUV Chain:A ((5-254))
-VIIPAR----------------KPMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYR-AGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAAN----
General information:
TITO was launched using:
RESULT:
Template:
3DUV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116085 for 1644 contacts (-70.6/contact) +
2D Compatibility (PS) -24583 + (NN) -15115 + (LL) 1724
1D Compatibility (HY) -13600 + (ID) 4000
Total energy: -171659.0 ( -104.42 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_3DUV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DUV-query.scw
PDB file :
Tito_Scwrl_3DUV.pdb
: