Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKDYQKLIVYLCDFLEKEVQKKGFKKVVYGLSGGLDSAVVGVL-CQKVFKENAHALLMPSSVSMPESRTDALNLCEKFSIPYTEYSIAPYDKIFGSHFKDASLT--RKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELAYYLN-----------IPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQTKPIHLETLIQLGYAEILVKNIISRIQKNAFKLELPTIAKRFNPE
3N05 Chain:A ((310-554))
----YSALVVGLRAY----VAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEP---MFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKP-----------------DYPVLDAILE----LYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAK
General information:
TITO was launched using:
RESULT:
Template:
3N05.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173364 for 1743 contacts (-99.5/contact) +
2D Compatibility (PS) -22750 + (NN) -9058 + (LL) 1652
1D Compatibility (HY) -17200 + (ID) 3650
Total energy: -224370.0 ( -128.73 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_3N05.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N05-query.scw
PDB file :
Tito_Scwrl_3N05.pdb
: