Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND
3TO5 Chain:A ((13-131))
MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML-KKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE---
General information:
TITO was launched using:
RESULT:
Template:
3TO5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77212 for 917 contacts (-84.2/contact) +
2D Compatibility (PS) -13301 + (NN) -8509 + (LL) -276
1D Compatibility (HY) -14400 + (ID) 3050
Total energy: -116748.0 ( -127.32 by residue)
QMean score : 0.689
(partial model without unconserved sides chains):
PDB file :
Tito_3TO5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TO5-query.scw
PDB file :
Tito_Scwrl_3TO5.pdb
: