Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFYTYSGETAAEALKIAQSHHGVDTLVFKTQEIRKKTLTSSGLYEIVVAVEEEENKKAPLIPESLYDEELNEEDVVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEKDAPLEDTPLEANKQDALLQALKDEANHKKEREKREVKQEEEIKDINAQLSKIRDSLKLIQNM--FWDEKNPNSVNIPQEFAEIYKLAKQSGMKSSHLDEIMQLSLELMPLRMRENSVTIKRYFREVLRKIILCR--PEDLNLRQKR--ILMLVGPTGVGKTTTLAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSI-----EAVIDAKDFAKEIEALEYCDFILVDTTG--HSQYD-KEKIAGLKEFIDGGYNI---DVSLVLSVTTKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVDCMLDGFSNPNKEQA |
| 4AK9 Chain:A ((77-382)) | ----------------------------------------------------------------------------------------------------------------------------------------------------QDPDIQLLFSGFSKTRENLAVVDELLTYWNLDESES--ILDELEEVL-LVSDFGPKTA-LKIVDTIRKDILAGRLKSGP-QIKEALKKNIFKLLTERVTTTELQLGNSRPAVLMIVGVNGGGKTTTLGKLANRFKK---EGVKVLMAAGDT--AAAGEQLEVWAQRTGSEIVMAPRPAAVLSQAVRRAVE--EDFDVVLCDTSGRLHTNYNLMEELRGCKRAVSKALSSAPNEVLLVLDGTTGLNMLAQAREFNQVIGVTGFILTKLDGTARGGCVVSVVDELSIPVKFVGVGEGID-DLQPFDAQSFVDALFP---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AK9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -127835 for 2371 contacts (-53.9/contact) +
2D Compatibility (PS) -30185 + (NN) -9781 + (LL) 12892
1D Compatibility (HY) -21600 + (ID) 4200
Total energy: -180709.0 ( -76.22 by residue)
QMean score : 0.496
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