Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNGSNHMKNKTLVISGATRGIGKAILYRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYPLNVLEPEQYTELFKQVDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSS----TGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGGTTFK |
| 2PNF Chain:A ((5-246)) | ------LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSG-ERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKL------FLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGN-VGQVNYS---TTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSE--EIKQKYKEQIPLGRFGSPEEVANVVLFLCSELAS-YITGEVIHVNGGMF-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PNF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123917 for 2012 contacts (-61.6/contact) +
2D Compatibility (PS) -25251 + (NN) -2060 + (LL) 160
1D Compatibility (HY) -16800 + (ID) 4000
Total energy: -171868.0 ( -85.42 by residue)
QMean score : 0.589
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