Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTT-SEMVSSHSLVYAFDKTSKMLEKSPLEDHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVEILKVIRENTNKKITSVKVRLGFE-KKIPKEIAH---ALNDAPVDYVVVHGRT------RSDRYQKDKIDYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNNTTELPAVVKKDLVLEHFDKMVEFYGDRGVIMFRKNLHAYAKGEMQASAFRNCVNTLTEIKSMRESIEEFFNQEMLQSEVPLWVELNQKSV |
| 3B0P Chain:A ((6-246)) | --------LSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRG--NRERLLAFRPEEHPIALQLAGSDPKSLAEAARIGEAFGY-DEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVT-VKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALIPPLRHDWVHRLKGDFPQLTF---------VTNGGIRSLEEA--LFHLKRVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVLKGTPPWAVLRHMLNLFRGRPKGRLWRRLLSEGRSLQALDRALRLMEEEVGE------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3B0P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93268 for 1827 contacts (-51.0/contact) +
2D Compatibility (PS) -23300 + (NN) -9436 + (LL) 3212
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -143142.0 ( -78.35 by residue)
QMean score : 0.378
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