Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFLVKKIGVVIMILVCFLACSQESFIKMQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQNMVYQPIEERNAFFQLTKDEDNSFNPENSVILLNEPSDNSEKNLLSYPNDPNNNEDNANNSQKNPFLYKPKRKTKNPKLIEYSQQDFYPLKNGDIIMSKEGDQWLIEIQSKALKRFLKDQNDKDRQIQTFTFNDTKTQIAQIKGKISSYVYTTNNGSLSLRPFYESFLLEKKSDNVYTIENKALDTMEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSDTELFLECLKES
1BYY Chain:A ((1487-1505))
--------------DIFMTEEQKKYYNAMKKLG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1BYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1236 for 72 contacts (17.2/contact) +
2D Compatibility (PS) -1646 + (NN) 1590 + (LL) 16476
1D Compatibility (HY) -800 + (ID) 200
Total energy: 16656.0 ( 231.33 by residue)
QMean score : 0.139
(partial model without unconserved sides chains):
PDB file :
Tito_1BYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BYY-query.scw
PDB file :
Tito_Scwrl_1BYY.pdb
: