Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKAVFINVWYLLLTIILLIIIWRIIKLVLKDKNDSGDKGLG
2K9J Chain:B ((712-718))
-------------------LLIWKLL----------------
General information:
TITO was launched using:
RESULT:
Template:
2K9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2482 for 18 contacts (-137.9/contact) +
2D Compatibility (PS) -486 + (NN) 1909 + (LL) 2976
1D Compatibility (HY) -2400 + (ID) 100
Total energy: -583.0 ( -32.39 by residue)
QMean score : 1.064
(partial model without unconserved sides chains):
PDB file :
Tito_2K9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K9J-query.scw
PDB file :
Tito_Scwrl_2K9J.pdb
: