Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKISCLLLVISLFGGFLNASSLYEKLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKELGVKIKFHETSWDIMLTGLKSGRFDMVANQVSLTTKKRQAAFDKSLPYSYSGTIMLVRKDENRIKDIRDIKGLKAANTLSSTYGEIAFKYDA--QIVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHK--NSPFKIAWESKEKDGGASFVINKHQEKALELINQAMRRLINKGVLKRLGEQFFGKDVSQP
3VVD Chain:A ((29-257))-----------------------FEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGI-TEERARAVDFTNPHYCTGGVIVSRKGGPRTA--KDLQGKVVGVQVGTTYMEAAQKIPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQER---VAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRCK


General information:
TITO was launched using:
RESULT:

Template: 3VVD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93700 for 1871 contacts (-50.1/contact) +
2D Compatibility (PS) -24524 + (NN) -11648 + (LL) 1680
1D Compatibility (HY) -10800 + (ID) 3100
Total energy: -142092.0 ( -75.94 by residue)
QMean score : 0.495

(partial model without unconserved sides chains):
PDB file : Tito_3VVD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VVD-query.scw
PDB file : Tito_Scwrl_3VVD.pdb: