Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKISCLLLVISLFGGFLNASSLYEKLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKELGVKIKFHETSWDIMLTGLKSGRFDMVANQVSLTTKKRQAAFDKSLPYSYSGTIMLVRKDENRIKDIRDIKGLKAANTLSSTYGEIAFKYDA--QIVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHK--NSPFKIAWESKEKDGGASFVINKHQEKALELINQAMRRLINKGVLKRLGEQFFGKDVSQP
3VVD Chain:A ((29-257))
-----------------------FEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGI-TEERARAVDFTNPHYCTGGVIVSRKGGPRTA--KDLQGKVVGVQVGTTYMEAAQKIPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQER---VAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRCK
General information:
TITO was launched using:
RESULT:
Template:
3VVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93700 for 1871 contacts (-50.1/contact) +
2D Compatibility (PS) -24524 + (NN) -11648 + (LL) 1680
1D Compatibility (HY) -10800 + (ID) 3100
Total energy: -142092.0 ( -75.94 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3VVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VVD-query.scw
PDB file :
Tito_Scwrl_3VVD.pdb
: