Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEIAVFGGGAWGRALAFAFGEK-NEVKI--ISRRDLNEPLKKLNDALISKGSAPIEQV----DLERGLKAA-LYVIAISVQHLREWFQNA-------SLPKNAKVLIASKGIEVLNKAFVSEIAKDFIDPNALCFLAGPSFAAEIIQGLPCALVIHSNNQALALEF----ANKTPSFIRAYAQQDIIGGEIAGAYKNVIAIAGGVCDGLKLGNSAKASLLSRGLVEMQRFGAFFGGKTETFLGLSGAGDLFLTANSILSRNYRVGLGLAQNKPLEVVLEELGEVAEGVKTTNAIVEIARKYGIYTPIASEL-ALLLKGKSVLESMNDLIRRA |
| 1N1E Chain:A ((20-343)) | ----VFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFV-CWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYKKKNPRDALADLLSCG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1N1E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202123 for 2687 contacts (-75.2/contact) +
2D Compatibility (PS) -32788 + (NN) -7104 + (LL) 760
1D Compatibility (HY) -24400 + (ID) 5300
Total energy: -270955.0 ( -100.84 by residue)
QMean score : 0.495
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