Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLINAVIEKDENGYFAFVPFLKGCVSQGKSYEEALRNIKEAIELYLGDL-EADELAFLSKKNSVIAPIEIAFA
2YKT Chain:A ((27-66))
----------------FNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMA
General information:
TITO was launched using:
RESULT:
Template:
2YKT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -457 for 143 contacts (-3.2/contact) +
2D Compatibility (PS) -4048 + (NN) -413 + (LL) 1360
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -7108.0 ( -49.71 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_2YKT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKT-query.scw
PDB file :
Tito_Scwrl_2YKT.pdb
: