Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIFLKKSLCALLISGFFIPPLMKAASFVYDLKFMSFNFNLASPPNNPYWNSLTKMQGRLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRW-WNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGG--------QLVIFHNANSHSMGDNYPYGGNSYLKPGDATPQWPNGYPYFSQKDNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYLYKNKWLSVRADAFFSFVGGGDGYHLYGKGGKWFVMYQQFLTLTIDTRELIDFVKSKIPK |
| 3WWD Chain:A ((122-213)) | --------------------------------------------------------------------------------------------------------------------------------------------------------NGWNWNPWFEGRAADPSGEHWKNDEGPDSSFFVAMVQCVGTKYKLDARRLFLGGISGGTMTNRALLFR---SNFWAGGLPISGEWYVTSDDGTPLSFDDARAAVAAAPTKIHQGRVGPYPLPAKVGPLIVMTVWGGEKDLWNCTRPDGSRFLCADYRPSTQAGSNFFSAQPDVVHVACSSTHGHMWPQLNTQEFNRWALDTLASHPKGSDPRSFKLTQPPEGYTCHVGPFTGLYASAWS----------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WWD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 1576 for 476 contacts (3.3/contact) +
2D Compatibility (PS) -8706 + (NN) -4840 + (LL) 12120
1D Compatibility (HY) -5200 + (ID) 1250
Total energy: -6300.0 ( -13.24 by residue)
QMean score : -0.083
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