Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKRIKTLLLFFGLNMVCLSVSFTNKPHLCFWFLVLGCYLVYEWQKKQKKDFQSAKSLKFDSVSELEKDLNMEVTNDEWDTIKKLNEKLKMFFNVENAIYVFLLVSYLIVGMRVTLSLIDNHGVLK
2KHQ Chain:A ((28-80))
------------------------------------------YESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLTHSYETIRKLNSYIRNAFDDAIHEGYVIKNPTYKAELHASVLEHHHHHH--
General information:
TITO was launched using:
RESULT:
Template:
2KHQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 17371 for 288 contacts (60.3/contact) +
2D Compatibility (PS) -5747 + (NN) -3222 + (LL) 4184
1D Compatibility (HY) -400 + (ID) 900
Total energy: 11286.0 ( 39.19 by residue)
QMean score : 0.218
(partial model without unconserved sides chains):
PDB file :
Tito_2KHQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KHQ-query.scw
PDB file :
Tito_Scwrl_2KHQ.pdb
: