Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFSVLTLFPQLILPYFEDSILKRALEKNLFELEVLNLRDFSANKYQKADHTLIGGGAGQILDPEMIENALHSVKNPKH----TIFLSAVGKPFKQIDAMRLAQKKHVVLVCGRYEGFDERSIELGADEVFCIGDFILTGGELGALCLIDSIARHIQGVLGNAQSLENESFENNYLETPNFANAVFKSKEINKIPAPLEYSKGNHAKIKQLKLDLSKLRTKFYRLDLFKQHKS
4YVH Chain:A ((21-245))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL--------DSFADGLLDCPHYT----RPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLAL
General information:
TITO was launched using:
RESULT:
Template:
4YVH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125375 for 1538 contacts (-81.5/contact) +
2D Compatibility (PS) -22970 + (NN) -8511 + (LL) 572
1D Compatibility (HY) -16400 + (ID) 3950
Total energy: -176634.0 ( -114.85 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_4YVH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVH-query.scw
PDB file :
Tito_Scwrl_4YVH.pdb
: