Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDLSYSLERVLQEDPAARNKWEVLLLYPGIHALLCYRLAHALHKRRFYFIARALSQLARFITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVRIGANAVVLSDLPTGSTAVGAKAKTITKDR
4HZD Chain:A ((91-254))
---LRVDIQAVYDRDPAYSRFMDPVLYLKGFHAIQTHRLAHWLYKQGRKDFAYYLQSRSSSIFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKSVPHNVTVAGVPARIIGETG
General information:
TITO was launched using:
RESULT:
Template:
4HZD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144957 for 1358 contacts (-106.7/contact) +
2D Compatibility (PS) -17664 + (NN) -6512 + (LL) 308
1D Compatibility (HY) -12000 + (ID) 3550
Total energy: -184375.0 ( -135.77 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_4HZD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HZD-query.scw
PDB file :
Tito_Scwrl_4HZD.pdb
: