Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVSQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEVAVAVLACGWSYLVIAQNLSQIPNALEDAFYGHWIKGYSSKEFQACVTWNINLLDSLALASSKQEIEKLKEIFIATSEYEYQFWDMAYQS
1UDD Chain:A ((3-214))
VMITDKLRRDSEQIWKKIFEHPFVVQLYSGTLPLEKFKFYVLQDFNYLVGLTRALAVISSKA-EYPLMAELIELARDEVTVEVENYVKLLKELDLTLEDAIKTEPTLVNSAYMDFMLATAYKGNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKIYREWGKVYLSNEYLNLVGRLRKIIDS----SGHSGYDRLRRIFITGSKFELAFWEMAWRG
General information:
TITO was launched using:
RESULT:
Template:
1UDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139553 for 1664 contacts (-83.9/contact) +
2D Compatibility (PS) -22181 + (NN) -6918 + (LL) 696
1D Compatibility (HY) -17600 + (ID) 3350
Total energy: -188906.0 ( -113.53 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_1UDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDD-query.scw
PDB file :
Tito_Scwrl_1UDD.pdb
: