Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDELRAEKSFPSKPYDSLKNKSEFDRVYRKGFKKHNPFFSLFVLDLSKEPPKEKEGFKDP-LSCRLKDRNTLCLLGLSVSKKVGNAVKRNLIKRRLRSLVTRHAALCQGFALVFVPRSDCYHLDFWALEKHFLEMLTSIKDYMNKALKDLKKGMTHTHAKQ
1MYR Chain:A ((126-194))
-------------------------DGLIKKGI---TPFVTLFHWDLPQTLQDEYEGFLDPQIIDDFKDYADLCF------EEFGDSVKYWLTINQLYSVPTRGYGSALDAPGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYTHQGGKIG
General information:
TITO was launched using:
RESULT:
Template:
1MYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5046 for 360 contacts (-14.0/contact) +
2D Compatibility (PS) -6792 + (NN) 1373 + (LL) 1452
1D Compatibility (HY) -6400 + (ID) 1350
Total energy: -16763.0 ( -46.56 by residue)
QMean score : 0.249
(partial model without unconserved sides chains):
PDB file :
Tito_1MYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MYR-query.scw
PDB file :
Tito_Scwrl_1MYR.pdb
: