Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVKGDTVGIICCSDGRKKEDENRIALLEQVLKTEFSLQVVFAETIFQKAESPFSGTPQARAIELMKLYQRSDVQMIFDISGGDAANQVLPYLDFDIIRNAQKPFVGYSDLTVILNAIYTKT-----------EQMG---------YNY---QLLHLVGKDSELQQSHFRKTFFENRVLISGE-QLNEFVW-------RGGEVIGGNIRCFLKLAGTNFMPDFT-NKIILLESLGGKEAKLASYVAQLEQLGAFSKCLGVIVGQHSEAEENGEYERIGRLYQQIGRKYKLPIFRTSEI--GHSVDAKPCLIGAKVNVSRETLTNF |
| 4JVO Chain:A ((61-328)) | ------------------------------------------------------SGSIQERAKELNALIRNPNVSCIMSTIGGMNSNSLLPYIDYDAFQNNPKIMIGYADATALLLGIYAKTGIPTFYGPALVPSFGEFEPFVDDTYKYFLETLLHDQALPYNIKQPLFWSDEFINWEEKTKEKELRPNNWISVTNGQATGRVIGGNLNTIQGIWGSPYMPCIQEGDILFIEDSSKDAATIERSFSFLKINGVFDKVSGIILGKHEQFDDCGTNRKPYEILLEVLQNQRIPLLADFDCCATHPMITMPIGVQVKMDATNKTI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JVO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -88810 for 1742 contacts (-51.0/contact) +
2D Compatibility (PS) -24757 + (NN) -5168 + (LL) 4652
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -132283.0 ( -75.94 by residue)
QMean score : 0.392
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