Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGQLKGLPVEDGFRMPGEYEPHIGCFMIWPERPDNWRLGGKPAQQNYKEVAVAISNFEPVTMFVSPNQY--KNARKELPDTIRVIEMSNDDAWIRDYGPSFLVDDKGDMRGVDWGFNAWGGLLDGLYFPWDKDNQIAKKVCELERIDY-YSQKDFILEGCSIHVDGEGTLVTTEECLLSEGRNPNLTKIEIEQTLKKYFHAQKVIWLKHGFYL-DETNGHVDNIFNFVAPGEVVLSWTDNKSDPQYEISRECYDILANKTDAKGRTFIIHKLHCPDPVLITQTESEGVEAINGTFPRQAGDRLAASYVNYYTANGAIIFPLFDDPKDKDAQELLEKLYPDRKIVGIKAREILLGGGNIHCITQHLPDKSTIRE |
| 3HVM Chain:A ((3-329)) | -------------RMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDTIGYEMLKNLPG-VEIAKVDTNDTWARDFG-AISIENHGVLECLDFGFNGWG-----LKYPSNLDNQVNFKLKSLGFLKHPLKTMPYVLEGGSIESDGAGSILTNTQCLLEKNRNPHLNQNGIETMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSACEDKNDEHYTALKKMQEELKTFKKLDKTPYKLIPLEIPKAIF-----------------DENQQRLPATYVNFLLCNDALIVPTYNDPKDALILETLKQHTP-LEVIGVDCNTLIKQHGSLHCVTMQL-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173307 for 2811 contacts (-61.7/contact) +
2D Compatibility (PS) -35185 + (NN) -16422 + (LL) 1360
1D Compatibility (HY) -23600 + (ID) 4800
Total energy: -251954.0 ( -89.63 by residue)
QMean score : 0.504
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